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molecular-phylogenetics

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Journal Articles
The American Biology Teacher. 2016; 787608–612 doi: https://doi.org/10.1525/abt.2016.78.7.608
Published: 01 September 2016
... text editor program: Notepad (Windows PC) or Texteditor (Linux/Mac). References Hall, B.G. ( 2013 ). Building phylogenetic trees from molecular data with MEGA . Molecular Biology and Evolution , 30 , 1229 – 1235 . Nei, M. & Kumar, S. ( 2000 ). Molecular Evolution and...
Journal Articles
The American Biology Teacher. 2010; 722114–121 doi: https://doi.org/10.1525/abt.2010.72.2.12
Published: 01 February 2010
...Wilfred A. Franklin In a flexible multisession laboratory, students investigate concepts of phylogenetic analysis at both the molecular and the morphological level. Students finish by conducting their own analysis on a collection of skeletons representing the major phyla of vertebrates, a...
Journal Articles
The American Biology Teacher. 2018; 802144–151 doi: https://doi.org/10.1525/abt.2018.80.2.144
Published: 01 February 2018
... level because of their preconceptions regarding distinct fields of biology compounded by the unique structure of phylogenetic trees. To address these two challenges while providing an undergraduate research opportunity, we developed an activity for introductory biology students that integrates molecular...
Journal Articles
The American Biology Teacher. 2020; 825333–337 doi: https://doi.org/10.1525/abt.2020.82.5.333
Published: 01 May 2020
... education. We present a series of student-centered, exploratory activities to help students develop their tree-thinking skills. In these activities, students use complementary phenotypic and molecular data to explore how to build phylogenetic trees and interpret the evolutionary relationships they represent...
Includes: Supplementary data
Journal Articles
The American Biology Teacher. 2012; 744244–249 doi: https://doi.org/10.1525/abt.2012.74.4.7
Published: 01 April 2012
... phylogenetic analysis were used to detect market substitution of Atlantic salmon for Pacific salmon. This allowed students to apply molecular methods such as polymerase chain reaction (PCR) and DNA sequencing to a socially relevant issue. Figure 1. An example of an agarose gel showing typical student...
Images
Published: 01 February 2018
) . Morphological changes are indicated along the appropriate branches (C) . Following the morphological analysis, students are given 18S DNA sequence data for their woody trees (D) . They identify variable sites that are different from the outgroup (circled), and use these characters to build a molecular
Journal Articles
The American Biology Teacher. 2019; 819680–685 doi: https://doi.org/10.1525/abt.2019.81.9.680
Published: 01 December 2019
... Mitosis............................2.98-RL Modeling............................2.98-RL, 3.193-TT, 5.373-TT, 6.417-I, 9.626-OL, 9.626-RL Modeling-based inquiry (MBI)............................6.417-I Molecular biology............................3.169-I, 3.202-I Molecular genetics...
Journal Articles
The American Biology Teacher. 2019; 818543–552 doi: https://doi.org/10.1525/abt.2019.81.8.543
Published: 01 October 2019
... data . Science , 323 , 732 – 737 . Hall, B.G. ( 2013 ). Building phylogenetic trees from molecular data with MEGA . Molecular Biology and Evolution , 30 , 1229 – 1235 . Hsu, F.L.K. ( 1964 ). Rethinking the concept “primitive .” Current Anthropology , 5 , 169 – 178 . Jönsson...
Journal Articles
The American Biology Teacher. 2019; 816417–422 doi: https://doi.org/10.1525/abt.2019.81.6.417
Published: 01 August 2019
.... & Wright, S.D. ( 2009 ). Latitude, elevation and the tempo of molecular evolution in mammals . Proceedings of the Royal Society B , 276 , 3353 – 3359 . Harlow, D.B. ( 2010 ). Structures and improvisation for inquiry‐based science instruction: a teacher's adaptation of a model of magnetism...
Includes: Supplementary data
Journal Articles
The American Biology Teacher. 2019; 813169–174 doi: https://doi.org/10.1525/abt.2019.81.3.169
Published: 01 March 2019
... complements taxonomy, molecular phylogenetics and population genetics . Trends in Genetics , 23 , 167 – 172 . Hebert, P.D. , Sujeevan, R. & de Waarrd, J.R. ( 2003 ). Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species . Proceedings of the Royal...
Journal Articles
The American Biology Teacher. 2019; 812115–119 doi: https://doi.org/10.1525/abt.2019.81.2.115
Published: 01 February 2019
...) and walleye (Stizostedion vitreum vitreum) . Journal of the Fisheries Research Board of Canada , 34 , 1922 – 1935 . Lim, D.D. , Motta, P. , Mara, K. & Martin A.P. ( 2010 ). Phylogeny of hammerhead sharks (Family Sphyrnidae) inferred from mitochondrial and nuclear genes . Molecular...
Journal Articles
The American Biology Teacher. 2019; 814250–255 doi: https://doi.org/10.1525/abt.2019.81.4.250
Published: 01 April 2019
...–legume symbiosis and nitrogen fixation under severe conditions and in an arid climate . Microbiology and Molecular Biology Reviews , 63 , 968 – 989 . Legumes nitrogen cycle data collection planting experiment © 2019 National Association of Biology Teachers. All rights reserved. Please...
Includes: Supplementary data
Journal Articles
The American Biology Teacher. 2019; 81132–39 doi: https://doi.org/10.1525/abt.2019.81.1.32
Published: 01 January 2019
... free program MEGA to build phylogenetic trees from molecular data . American Biology Teacher , 78 , 608 – 611 . Price, S.J. , Garner, T.W.J. , Nichols, R.A. , Balloux, F. , Ayres, C. , Mora-Cabello de Alba, A. & Bosch, J. ( 2014 ). Collapse of amphibian communities due to an...
Journal Articles
The American Biology Teacher. 2019; 81279–87 doi: https://doi.org/10.1525/abt.2019.81.2.79
Published: 01 February 2019
... : Freeman . Graur, D. & Li, W.H. ( 2000 ). Fundamentals of Molecular Evolution , 2nd ed. Sunderland, MA : Sinauer Associates . Hall, B.K. ( 1994 ). Homology: The Hierarchical Basis of Comparative Biology . San Diego, CA : Academic Press . Hamilton, M.B. ( 2009 ). Population...
Journal Articles
The American Biology Teacher. 2018; 809650–658 doi: https://doi.org/10.1525/abt.2018.80.9.650
Published: 01 November 2018
... Five Kingdoms of Life. The first gene sequence-based quantitative assessment of phylogenetic (evolutionary) relationships between representatives of the major known kinds of organisms ( Woese & Fox, 1977 ). And so began the debate of molecular phylogeny verses morphological taxonomy, with questions...
Journal Articles
The American Biology Teacher. 2018; 809697–701 doi: https://doi.org/10.1525/abt.2018.80.9.697
Published: 01 November 2018
...............................3.214-I, 6.457-TT Modular systems approach............................9.661-RL Molecular genetics............................1.21-I, 4.264-RL Mollusca............................4.278-I Morphology............................4.278-I mRNA............................9.642-F, 9.642-OL...
Journal Articles
The American Biology Teacher. 2018; 808619–624 doi: https://doi.org/10.1525/abt.2018.80.8.619
Published: 01 October 2018
... States, By States . Washington, DC : National Academies Press . Newman, L. , Duffus, A.L.J. & Lee, C. ( 2016 ). Using the free program MEGA to build phylogenetic trees from molecular data . The American Biology Teacher , 78 , 608 – 612 . Taylor, J.M. , Davidson, R.M. & Strong...
Includes: Supplementary data
Journal Articles
The American Biology Teacher. 2018; 808561–569 doi: https://doi.org/10.1525/abt.2018.80.8.561
Published: 01 October 2018
..., NY : W.W. Norton . Carroll, S.B. ( 2008 ). Evo-devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution . Cell , 134 , 25 – 36 . Carroll, S.B. , Grenier, J.K. & Weatherbee, S.D. ( 2004 ). From DNA to Diversity: Molecular Genetics and the...
Journal Articles
The American Biology Teacher. 2018; 804278–284 doi: https://doi.org/10.1525/abt.2018.80.4.278
Published: 01 April 2018
... molecular tree constructed using the CO1 data from Table 1. Figure 1. Summary of upper-level phylogenetics project for zoology course. Figure 1. Summary of upper-level phylogenetics project for zoology course. Figure 2. Partial compilation of CO1 sequences of selected taxa in FASTA...
Journal Articles
The American Biology Teacher. 2017; 799729–737 doi: https://doi.org/10.1525/abt.2017.79.9.729
Published: 01 November 2017
... phylogenetic tree construction . American Biology Teacher , 77 , 587 – 599 . Lents, N. H. , Cifuentes, O. E. , & Carpi, A. ( 2010 ). Teaching the process of molecular phylogeny and systematics: A multi-part inquiry-based exercise . CBE–Life Sciences Education , 9 , 513 – 523 . Maxwell, A...